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  • arXiv:2409. 13113v1 [quant-ph] 19 Sep 2024 Oscillatory . . .
    Engineering Hamiltonians to produce a desired poten-tial landscape is a crucial task in quantum computing [1–5] Among these landscapes, double-wells hold partic-ular importance, serving as models for diverse systems like two-level defects [6, 7], nuclear structures [8], and chemical reactions [5, 9] However, tuning parameters ex-perimentally within these systems, like the barrier height
  • GenoPipe: identifying the genotype of origin within (epi . . .
    The resulting BAM files were sorted and indexed and run through DeletionID using the same `sacCer3_Del` database used for the yeast simulations DeletionID was run with default parameters, filtering genes for a mappability greater than 25% and filtering the on a log2 output threshold of less than -2 for the final scores
  • Peak calling by Sparse Enrichment Analysis for CUT RUN . . .
    Background: CUT RUN is an eficient epigenome profiling method that identifies sites of DNA binding protein enrichment genome-wide with high signal to noise and low sequencing requirements Currently, the analysis of CUT RUN data is complicated by its exceptionally low background, which renders programs designed for analysis of ChIP-seq data vulnerable to oversensitivity in identifying sites of
  • MethylSeqLogo: DNA methylation smart sequence logos - bioRxiv
    Abstract Background: Sequence logos can effectively visualize position specific base preferences evident in a collection of binding sites of some transcription factor But those preferences usually fall far short of fully explaining binding specificity Interestingly, some transcription factors bind sites of potentially methylated DNA For example, MYC binds CpG sites This may increase
  • Aberrant Inclusion of a Poison Exon Causes Dravet Syndrome . . .
    SCN1A (MIM: 182389) pathogenic variants are detected in more than 80% of individuals with Dravet syndrome (DS), a developmental and epileptic encephalopathy (DEE) char-acterized by seizure onset in infancy It typically involves a febrile seizure and follows a classic electroclinical and developmental course that culminates in intellectual disability and refractory seizures 7 Pathogenic SCN1A
  • arXiv:2409. 13113v2 [quant-ph] 30 Dec 2024
    arXiv:2409 13113v2 [quant-ph] 30 Dec 2024 Oscillatory dissipative tunneling in an asymmetric double-well potential





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